SMTL ID : 6x7w.1 (1 other biounit)

Vaccine-elicited mouse FP-targeting neutralizing antibody vFP49.02 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- LEU- GLY- ALA- VAL- PHE: HIV fusion peptide 512-519(Non-covalent)

ALA-VAL-GLY-LEU-GLY-ALA-VAL-PHE.1: 17 residues within 4Å: Chain A: F.31, Y.32, S.33, T.50, G.55, V.56, H.101, G.102, E.103, G.104, G.107, S.108 Chain B: N.32, T.91, N.92, S.93, W.94 19 PLIP interactions: 14 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.31, A:Y.32, A:T.50, A:E.103, B:W.94, B:W.94 Hydrogen bonds: A:S.33, A:G.102, A:G.104, A:S.108, A:S.108, A:S.108, A:S.108, B:N.32, B:T.91 Water bridges: A:F.31, A:S.33, B:T.91 pi-Stacking: A:F.31

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain B: P.59, S.60 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.60, B:S.60 Water bridges: B:R.61, B:R.61, B:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Distinct Classes of HIV-1 Cross-Clade Neutralizing Antibodies Targeting Fusion Peptide Elicited in Mice by Diverse Immunization Regimens. To Be Published

Release Date

2021-06-02

Peptides

antibody vFP49.02 heavy chain: A
antibody vFP49.02 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

antibody vFP49.02 heavy chain

antibody vFP49.02 light chain

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