SMTL ID : 6x81.1 (1 other biounit)

Crystal Structure of TNFalpha with isoquinoline compound 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-trimer

Ligands

2 x UTJ: [4-(isoquinolin-8-yl)phenyl]acetonitrile(Non-covalent)

UTJ.1: 14 residues within 4Å: Chain A: L.58, Y.60, S.61, L.121, G.122, Y.152 Chain B: Y.120 Chain C: L.58, I.59, Y.60, Y.120, G.122, G.123 Ligands: UTJ.2 7 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: A:L.58, A:Y.60, C:Y.120, B:Y.120, B:Y.120, B:Y.120 pi-Stacking: A:Y.60 UTJ.2: 15 residues within 4Å: Chain A: K.12, L.58, I.156, A.157, L.158 Chain B: L.58, Y.60, S.61, Y.120, L.121, G.122, Y.152, I.156 Chain C: Y.120 Ligands: UTJ.1 11 PLIP interactions: 4 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.58, A:I.156, A:L.158, B:L.58, B:L.58, B:Y.60, B:Y.120, B:I.156 Water bridges: A:K.12 Hydrogen bonds: B:Y.152 pi-Stacking: B:Y.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dietrich, J.D. et al., Development of Orally Efficacious Allosteric Inhibitors of TNF alpha via Fragment-Based Drug Design. J.Med.Chem. (2021)

Release Date

2021-01-13

Peptides

Tumor necrosis factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tumor necrosis factor

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