SMTL ID : 6xa7.3 (3 other biounits)

Crystal Structure of Human Scribble PDZ2:Vangl2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x SER- GLU- THR- SER- VAL: Vang-like protein 2(Non-covalent)

SER-GLU-THR-SER-VAL.1: 18 residues within 4Å: Chain A: R.13, G.17, L.18, G.19, F.20, S.21, I.22, A.23, G.24, S.28, T.29, S.41, R.42, H.74, V.78, L.81, T.82 Ligands: EDO.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.18, A:A.23, A:V.78 Hydrogen bonds: A:F.20, A:I.22, A:I.22, A:S.28, A:S.41, A:S.41, A:H.74, A:L.81 Water bridges: A:G.24 Salt bridges: A:R.42

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: E.45, G.46, H.50 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: E.45 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.45 EDO.4: 6 residues within 4Å: Chain A: C.10, L.11, A.12, A.48, R.51, A.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.48 EDO.5: 4 residues within 4Å: Chain A: Y.31, S.41, R.42 Ligands: SER-GLU-THR-SER-VAL.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

How, J.Y. et al., Structural basis of the human Scribble-Vangl2 association in health and disease. Biochem.J. (2021)

Release Date

2021-03-24

Peptides

Protein scribble homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Protein scribble homolog

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