- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CO: COBALT (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: H.13, G.79, E.80
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:E.80
- Water bridges: A:H.13, A:G.79, A:E.80, A:E.80, A:E.80
- Salt bridges: A:H.13
SO4.3: 3 residues within 4Å:- Chain A: R.23, A.24
- Chain B: K.102
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.23, B:K.102
SO4.7: 3 residues within 4Å:- Chain B: H.13, G.79, E.80
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.80
- Water bridges: B:H.13, B:G.79, B:E.80, B:E.80
- Salt bridges: B:H.13
SO4.8: 3 residues within 4Å:- Chain A: K.102
- Chain B: R.23, A.24
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.23, A:K.102
- 2 x KFV: [1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium(Non-covalent)
KFV.4: 24 residues within 4Å:- Chain A: H.7, Q.39, V.41, E.43, A.70, V.71, K.73, W.74, K.77, H.83, H.84, L.107, Y.108, G.114, S.115, I.120, F.122, P.125, K.126, G.130, L.132, E.134
- Ligands: CO.1, COA.5
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:A.70, A:L.107
- Hydrogen bonds: A:Q.39, A:K.77, A:H.83, A:K.126, A:L.132, A:E.134
- Water bridges: A:W.74, A:K.77, A:N.78, A:N.78
- Salt bridges: A:K.73, A:K.73, A:K.77, A:K.126
KFV.9: 24 residues within 4Å:- Chain B: H.7, Q.39, V.41, E.43, A.70, V.71, K.73, W.74, K.77, H.83, H.84, L.107, Y.108, G.114, S.115, I.120, F.122, P.125, K.126, G.130, L.132, E.134
- Ligands: CO.6, COA.10
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:A.70, B:L.107
- Hydrogen bonds: B:Q.39, B:K.77, B:H.83, B:K.126, B:L.132, B:E.134
- Water bridges: B:W.74, B:K.77, B:N.78, B:N.78, B:Y.108
- Salt bridges: B:K.73, B:K.73, B:K.77, B:K.126
- 2 x COA: COENZYME A(Non-covalent)
COA.5: 16 residues within 4Å:- Chain A: Q.39, A.70, V.71, K.73, W.74, K.77, H.83, H.84, L.107, Y.108, F.122, P.125, K.126, G.130, L.132
- Ligands: KFV.4
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:L.107, A:F.122, A:L.132
- Hydrogen bonds: A:Q.39, A:K.77, A:H.83, A:K.126, A:L.132
- Water bridges: A:A.70, A:W.74, A:K.77, A:N.78, A:N.78
- Salt bridges: A:K.73, A:K.73, A:K.77, A:K.126
COA.10: 16 residues within 4Å:- Chain B: Q.39, A.70, V.71, K.73, W.74, K.77, H.83, H.84, L.107, Y.108, F.122, P.125, K.126, G.130, L.132
- Ligands: KFV.9
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:L.107, B:F.122, B:L.132
- Hydrogen bonds: B:Q.39, B:K.77, B:H.83, B:K.126, B:L.132
- Water bridges: B:A.70, B:W.74, B:K.77, B:N.78, B:N.78, B:Y.108, B:Y.108
- Salt bridges: B:K.73, B:K.73, B:K.77, B:K.126
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stunkard, L.M. et al., Streptomyces coelicolor methylmalonyl-CoA epimerase (Q60A) in complex with 2-nitronate-propionyl-CoA. To Be Published
- Release Date
- 2020-07-01
- Peptides
- Methylmalonyl-CoA epimerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CO: COBALT (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x KFV: [1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium(Non-covalent)
- 2 x COA: COENZYME A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stunkard, L.M. et al., Streptomyces coelicolor methylmalonyl-CoA epimerase (Q60A) in complex with 2-nitronate-propionyl-CoA. To Be Published
- Release Date
- 2020-07-01
- Peptides
- Methylmalonyl-CoA epimerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A