SMTL ID : 6xe6.1

Structure of Human Dispatched-1 (DISP1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.53 Å

Oligo State

monomer

Ligands

5 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.1: 6 residues within 4Å: Chain A: L.583, S.820, T.823, L.824, M.827, V.863 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.583, A:L.824, A:V.863 Y01.2: 7 residues within 4Å: Chain A: L.869, F.930, M.937, T.949, M.952, C.956 Ligands: Y01.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.930, A:F.930 Y01.3: 9 residues within 4Å: Chain A: D.418, V.419, Y.422, I.438, H.442, H.894, R.917, S.920, A.921 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.419, A:V.419, A:Y.422, A:I.438, A:H.442, A:R.917, A:A.921 Salt bridges: A:K.427 Y01.4: 7 residues within 4Å: Chain A: W.563, F.564, S.865, L.868, L.869, I.957 Ligands: Y01.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.563, A:F.564, A:L.868, A:L.869, A:I.957 Y01.5: 6 residues within 4Å: Chain A: Q.336, L.339, T.343, L.399, L.402, Y.944 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.339, A:L.399, A:L.399, A:L.402 Hydrogen bonds: A:Q.336

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain A: N.675 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.675

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., Structure of human Dispatched-1 provides insights into Hedgehog ligand biogenesis. Life Sci Alliance (2020)

Release Date

2020-07-08

Peptides

Protein dispatched homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Protein dispatched homolog 1