- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-2-1-2-mer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: D.208, N.209, D.218
- Ligands: ADP.4
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.218
MG.12: 5 residues within 4Å:- Chain E: K.292, S.293, D.378
- Ligands: ADP.10, AF3.11
No protein-ligand interaction detected (PLIP)MG.19: 5 residues within 4Å:- Chain F: K.292, S.293, D.378
- Ligands: ADP.17, AF3.18
No protein-ligand interaction detected (PLIP)- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 12 residues within 4Å:- Chain A: F.35, K.50, N.52, K.73, H.75, N.79, R.116, N.209, Y.217, D.218, G.220
- Ligands: MG.3
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.52, A:D.218
- Salt bridges: A:K.50, A:K.50, A:K.73, A:K.73, A:R.116
- pi-Stacking: A:H.75
ADP.10: 12 residues within 4Å:- Chain E: P.287, P.288, G.289, T.290, G.291, K.292, H.294, R.447, E.544, R.571
- Ligands: AF3.11, MG.12
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:G.289, E:T.290, E:K.292, E:H.294, E:E.544, E:R.571
- pi-Stacking: E:H.294
ADP.17: 11 residues within 4Å:- Chain F: G.286, P.287, P.288, G.289, T.290, G.291, K.292, K.324, R.446
- Ligands: AF3.18, MG.19
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:G.289, F:T.290, F:K.292
- Salt bridges: F:K.324
- 3 x 1N7: CHAPSO(Non-covalent)
1N7.5: 3 residues within 4Å:- Chain A: V.204, I.223, V.233
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.204, A:I.223, A:V.233
1N7.6: 4 residues within 4Å:- Chain A: R.197, V.231, K.288, Y.289
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.231, A:Y.289
- Hydrogen bonds: A:R.197, A:K.288
1N7.13: 4 residues within 4Å:- Chain A: V.905
- Chain E: V.49, Y.74, F.94
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain A- Hydrophobic interactions: E:V.49, E:F.94, A:V.905
- Hydrogen bonds: E:Y.74
- 2 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.11: 9 residues within 4Å:- Chain E: G.286, P.287, P.288, G.289, T.290, K.292, E.379
- Ligands: ADP.10, MG.12
No protein-ligand interaction detected (PLIP)AF3.18: 8 residues within 4Å:- Chain F: G.286, P.287, P.288, T.290, K.292, D.378
- Ligands: ADP.17, MG.19
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, J. et al., Structural Basis for Helicase-Polymerase Coupling in the SARS-CoV-2 Replication-Transcription Complex. Cell (2020)
- Release Date
- 2020-07-29
- Peptides
- RNA-directed RNA polymerase: A
Non-structural protein 8: BD
Non-structural protein 7: C
Helicase: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
CE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-2-1-2-mer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x 1N7: CHAPSO(Non-covalent)
- 2 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, J. et al., Structural Basis for Helicase-Polymerase Coupling in the SARS-CoV-2 Replication-Transcription Complex. Cell (2020)
- Release Date
- 2020-07-29
- Peptides
- RNA-directed RNA polymerase: A
Non-structural protein 8: BD
Non-structural protein 7: C
Helicase: EF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
CE
EF
F