SMTL ID : 6xf9.1

Crystal structure of KSHV ORF68

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-pentamer

Ligands

15 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.52, C.55, H.130, C.136 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.52, A:C.55, A:H.130, A:C.136 ZN.2: 4 residues within 4Å: Chain A: C.296, C.299, H.366, C.373 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.296, A:C.299, A:H.366, A:C.373 ZN.3: 4 residues within 4Å: Chain A: C.191, C.192, C.415, H.452 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.191, A:C.192, A:C.415, A:H.452 ZN.4: 4 residues within 4Å: Chain B: C.52, C.55, H.130, C.136 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.52, B:C.55, B:H.130, B:C.136 ZN.5: 4 residues within 4Å: Chain B: C.296, C.299, H.366, C.373 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.296, B:C.299, B:H.366, B:C.373 ZN.6: 4 residues within 4Å: Chain B: C.191, C.192, C.415, H.452 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.191, B:C.192, B:C.415, B:H.452 ZN.7: 4 residues within 4Å: Chain C: C.52, C.55, H.130, C.136 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.52, C:C.55, C:H.130, C:C.136 ZN.8: 4 residues within 4Å: Chain C: C.296, C.299, H.366, C.373 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.296, C:C.299, C:H.366, C:C.373 ZN.9: 4 residues within 4Å: Chain C: C.191, C.192, C.415, H.452 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.191, C:C.192, C:C.415, C:H.452 ZN.10: 4 residues within 4Å: Chain D: C.52, C.55, H.130, C.136 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.52, D:C.55, D:H.130, D:C.136 ZN.11: 4 residues within 4Å: Chain D: C.296, C.299, H.366, C.373 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.296, D:C.299, D:H.366, D:C.373 ZN.12: 4 residues within 4Å: Chain D: C.191, C.192, C.415, H.452 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.191, D:C.192, D:C.415, D:H.452 ZN.13: 4 residues within 4Å: Chain E: C.52, C.55, H.130, C.136 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.52, E:C.55, E:H.130, E:C.136 ZN.14: 4 residues within 4Å: Chain E: C.296, C.299, H.366, C.373 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.296, E:C.299, E:H.366, E:C.373 ZN.15: 4 residues within 4Å: Chain E: C.191, C.192, C.415, H.452 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.191, E:C.192, E:C.415, E:H.452

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Didychuk, A.L. et al., A pentameric protein ring with novel architecture is required for herpesviral packaging. Elife (2021)

Release Date

2021-02-24

Peptides

Packaging protein UL32: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Packaging protein UL32