SMTL ID : 6xg6.1

Full-length human mitochondrial Hsp90 (TRAP1) with ADP-BeF3

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: N.66, A.70, K.73, D.105, M.110, N.118, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: BEF.2, MG.3, K.4 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.66, A:K.73, A:D.105, A:G.126, A:S.127, A:Q.147, A:F.148, A:G.149, A:V.150, A:G.151, A:F.152, A:T.198, A:R.349 ADP.5: 22 residues within 4Å: Chain B: N.66, A.67, A.70, K.73, D.105, M.110, N.118, L.119, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198 Ligands: BEF.6, MG.7, K.8 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.66, B:K.73, B:K.73, B:D.105, B:N.118, B:S.125, B:G.126, B:S.127, B:S.127, B:S.127, B:G.146, B:F.148, B:G.149, B:V.150, B:G.151, B:F.152

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 12 residues within 4Å: Chain A: Y.53, E.62, N.66, G.146, Q.147, F.148, G.149, V.150, G.151, R.349 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP) BEF.6: 11 residues within 4Å: Chain B: E.62, N.66, G.146, Q.147, F.148, G.149, V.150, G.151, R.349 Ligands: ADP.5, MG.7 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: E.62, N.66, G.146 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP) MG.7: 6 residues within 4Å: Chain B: E.62, N.66, G.151, F.152 Ligands: ADP.5, BEF.6 No protein-ligand interaction detected (PLIP)

2 x K: POTASSIUM ION(Non-covalent)

K.4: 6 residues within 4Å: Chain A: N.118, T.121, R.124, G.149, Y.153 Ligands: ADP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:N.118, A:G.149, A:Y.153 K.8: 6 residues within 4Å: Chain B: N.118, T.121, R.124, G.149, Y.153 Ligands: ADP.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:N.118, B:G.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-30

Peptides

Heat shock protein 75 kDa, mitochondrial, Fibronectin binding protein fusion: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Heat shock protein 75 kDa, mitochondrial, Fibronectin binding protein fusion

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