SMTL ID : 6xgc.1

CryoEM structure of influenza hemagglutinin A/Michigan/45/2015 in complex with cyno antibody 1C4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: E.66, D.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain E: E.66, D.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain I: E.66, D.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP)

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: G.46, N.276 Ligand excluded by PLIP NAG.5: 1 residues within 4Å: Chain A: N.287 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain A: N.23 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: N.11, S.12, T.13 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain B: K.39, N.154, T.156 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain E: G.46, N.276 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain E: N.287 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain E: N.23 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain E: N.11, S.12, T.13 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain F: K.39, N.154, T.156 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain I: G.46, N.276 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain I: N.287 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain I: N.23 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain I: N.11, S.12, T.13 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain J: K.39, N.154, T.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Darricarrere, N. et al., Broad neutralization of H1 and H3 viruses by adjuvanted influenza HA stem vaccines in nonhuman primates. Sci Transl Med (2021)

Release Date

2021-03-10

Peptides

Hemagglutinin HA1 chain: AEI
Hemagglutinin HA2 chain: BFJ
1C4 Fab heavy chain: CGK
1C4 Fab light chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
C

I
E

B
B

F
D

J
F

C
M

G
H

K
I

D
N

H
L

L
J

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

1C4 Fab heavy chain

1C4 Fab light chain