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SMTL ID : 6xhq.1
Crystal structure of S. aureus TarI in complex with CDP-ribitol (space group C121)
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
homo-dimer
Ligands
2 x
V2V
:
CDP-ribitol
(Non-covalent)
V2V.1:
26 residues within 4Å:
Chain A:
L.7
,
A.8
,
G.9
,
G.10
,
Q.23
,
G.81
,
S.82
,
D.83
,
R.84
,
T.87
,
D.111
,
A.112
,
V.113
,
R.114
,
D.136
,
G.166
,
Q.167
,
T.168
,
Q.170
,
S.193
,
D.194
,
K.217
,
T.219
Chain B:
D.143
,
T.144
,
R.160
24
PLIP interactions
:
19 interactions with chain A
,
5 interactions with chain B
Hydrophobic interactions:
A:R.84
Hydrogen bonds:
A:G.9
,
A:G.9
,
A:Q.23
,
A:G.81
,
A:T.87
,
A:D.111
,
A:D.111
,
A:A.112
,
A:V.113
,
A:R.114
,
A:D.136
,
A:S.193
,
B:D.143
,
B:T.144
,
B:T.144
,
B:R.160
Water bridges:
A:G.10
,
A:Q.170
,
A:K.217
,
A:K.217
Salt bridges:
A:K.217
,
A:K.217
,
B:R.160
V2V.2:
26 residues within 4Å:
Chain A:
D.143
,
T.144
,
R.160
Chain B:
L.7
,
A.8
,
G.9
,
G.10
,
Q.23
,
G.81
,
S.82
,
D.83
,
R.84
,
T.87
,
D.111
,
A.112
,
V.113
,
R.114
,
D.136
,
G.166
,
Q.167
,
T.168
,
Q.170
,
S.193
,
D.194
,
K.217
,
T.219
17
PLIP interactions
:
13 interactions with chain B
,
4 interactions with chain A
Hydrogen bonds:
B:G.9
,
B:G.10
,
B:G.81
,
B:T.87
,
B:D.111
,
B:D.111
,
B:A.112
,
B:V.113
,
B:R.114
,
B:D.136
,
B:S.193
,
A:T.144
,
A:T.144
,
A:R.160
Salt bridges:
B:K.217
,
B:K.217
,
A:R.160
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Li, F.K.K. et al., Crystallographic analysis of TarI and TarJ, a cytidylyltransferase and reductase pair for CDP-ribitol synthesis in Staphylococcus aureus wall teichoic acid biogenesis. J.Struct.Biol. (2021)
Release Date
2021-04-21
Peptides
Ribitol-5-phosphate cytidylyltransferase 1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
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ClustalW
PNG
Ribitol-5-phosphate cytidylyltransferase 1
Related Entries With Identical Sequence
6xhp.1
|
6xhr.1
|
6xhr.2
|
6xhr.3
|
6xhs.1
|
6xhs.2
|
6xhs.3
|
6xht.1
|
6xht.2
|
6xht.3
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme