SMTL ID : 6xi3.1

Crystal structure of tetra-tandem repeat in extending region of large adhesion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.289, D.315, T.317, D.343, N.399 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.289, A:D.315, A:T.317, A:D.343, H2O.10 CA.2: 3 residues within 4Å: Chain A: D.386, D.412, T.414 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.386, A:D.412, A:T.414, H2O.16 CA.3: 5 residues within 4Å: Chain A: D.192, D.218, T.220, D.246, N.302 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.192, A:D.218, A:T.220, A:D.246, H2O.7 CA.4: 5 residues within 4Å: Chain A: D.95, D.121, T.123, D.149, N.205 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.95, A:D.121, A:T.123, A:D.149, H2O.2

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: G.397, R.398, N.399, G.400, N.401 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: A.75, T.76, S.84 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 6 residues within 4Å: Chain A: D.356, S.357, V.385, D.386, G.387, D.388 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.357, A:G.387

1 x EDT: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID(Non-covalent)

EDT.8: 6 residues within 4Å: Chain A: D.223, L.224, T.225, V.306, S.307, D.308 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.223, A:S.307 Salt bridges: A:D.223, A:D.308

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 5 residues within 4Å: Chain A: G.132, T.133, N.142, L.143, S.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.132, A:N.142, A:S.144 Water bridges: A:L.143

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.10: 4 residues within 4Å: Chain A: V.32, D.114, S.115, A.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.32, A:D.114 Water bridges: A:L.34, A:N.117 EDO.11: 5 residues within 4Å: Chain A: Q.139, S.188, S.189, L.190, V.191 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vance, T.D.R. et al., Essential role of calcium in extending RTX adhesins to their target. J Struct Biol X (2020)

Release Date

2020-10-14

Peptides

Large adhesion protein (Lap) involved in biofilm formation: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Large adhesion protein (Lap) involved in biofilm formation