SMTL ID : 6xio.1

ADP-dependent kinase complex with fructose-6-phosphate and ADPbetaS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

monomer

Ligands

1 x AT4: 5'-O-[(R)-HYDROXY(THIOPHOSPHONOOXY)PHOSPHORYL]ADENOSINE(Non-covalent)

AT4.1: 16 residues within 4Å: Chain A: R.227, D.331, H.381, S.382, L.383, Y.386, K.479, V.480, V.481, G.489, I.490, G.491, D.492, I.494 Ligands: F6P.2, MG.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.227, A:R.227, A:S.382, A:V.481, A:V.481 Water bridges: A:Q.137, A:T.305 Salt bridges: A:H.381

1 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.2: 16 residues within 4Å: Chain A: N.53, N.55, D.57, E.111, G.135, G.136, Q.137, I.140, K.200, N.202, I.229, S.231, Q.265, M.266, D.492 Ligands: AT4.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.53, A:N.55, A:D.57, A:E.111, A:G.136, A:N.202, A:S.231, A:S.231, A:Q.265 Salt bridges: A:K.200

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 1 residues within 4Å: Ligands: AT4.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munoz, S.M. et al., Structure of an ancestral ADP-dependent kinase with fructose-6P reveals key residues for binding, catalysis, and ligand-induced conformational changes. J.Biol.Chem. (2020)

Release Date

2021-01-20

Peptides

ADP-dependent phosphofructokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-dependent phosphofructokinase

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