SMTL ID : 6xip.1

The 1.5 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-2-2-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.53 Chain B: L.46, A.74, R.114 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.114, B:R.114 Water bridges: A:E.53 EDO.2: 7 residues within 4Å: Chain B: I.80, Q.81, Q.82, V.83, I.90, V.91, L.93 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.83, B:V.91 EDO.3: 4 residues within 4Å: Chain C: S.27, W.32, A.33, V.36 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.27 EDO.4: 6 residues within 4Å: Chain C: E.53, V.56 Chain D: L.46, A.74, R.114, A.118 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.114, D:R.114 EDO.5: 4 residues within 4Å: Chain D: N.29, N.32, N.33, D.36 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.29, D:D.36 Water bridges: D:N.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilamowski, M. et al., Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication. Biophys.J. (2021)

Release Date

2020-07-01

Peptides

Non-structural protein 7: AC
Non-structural protein 8: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Non-structural protein 7

Non-structural protein 8

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