SMTL ID : 6xj3.3 (3 other biounits)

Crystal structure of Class D beta-lactamase from Klebsiella quasipneumoniae in complex with avibactam

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x NXL: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide(Covalent)

NXL.1: 11 residues within 4Å: Chain A: A.53, S.54, F.86, S.102, V.104, I.142, K.192, T.193, G.194, W.195, R.231 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.86 Hydrogen bonds: A:S.54, A:S.102, A:S.102, A:T.193, A:W.195 Water bridges: A:K.192 Salt bridges: A:K.192, A:R.231

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: E.31, R.32, Q.33, A.34, T.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Class D beta-lactamase from Klebsiella quasipneumoniae. To Be Published

Release Date

2020-07-01

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-lactamase

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