SMTL ID : 6xj5.3 (3 other biounits)

Carboxypeptidase G2 modified with a versatile bioconjugate for metalloprotein design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

homo-dimer

Ligands

17 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.137, E.171, E.172, H.381 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.137, A:E.172, A:E.172, A:H.381 ZN.2: 6 residues within 4Å: Chain A: H.108, D.137, D.138, E.171, E.196 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.108, A:D.137, A:D.137, A:E.196, A:E.196 ZN.3: 1 residues within 4Å: Chain A: H.225 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.225 ZN.4: 2 residues within 4Å: Chain A: R.179, D.180 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.180, A:D.180 ZN.5: 1 residues within 4Å: Chain A: D.383 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.383, H2O.1 ZN.6: 3 residues within 4Å: Chain A: E.50, D.55, K.115 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.55, A:D.55 ZN.7: 1 residues within 4Å: Chain A: E.289 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.289, H2O.1 ZN.8: 1 residues within 4Å: Chain A: E.67 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.67 ZN.9: 3 residues within 4Å: Chain A: C.199, A.200 Chain B: C.199 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.199, A:A.200 ZN.10: 5 residues within 4Å: Chain B: D.137, E.171, E.172, H.381 Ligands: ZN.11 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.137, B:E.172, B:E.172, B:H.381 ZN.11: 5 residues within 4Å: Chain B: H.108, D.137, E.171, E.196 Ligands: ZN.10 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.108, B:D.137, B:D.137, B:E.196, B:E.196 ZN.12: 1 residues within 4Å: Chain B: H.225 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.225, H2O.2 ZN.13: 1 residues within 4Å: Chain B: D.55 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.55, B:D.55, H2O.1 ZN.14: 2 residues within 4Å: Chain B: D.25, V.27 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.25 ZN.15: 1 residues within 4Å: Chain B: E.67 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.67 ZN.16: 2 residues within 4Å: Chain B: D.251, N.260 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.251 ZN.17: 1 residues within 4Å: Chain B: E.35 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmad, R. et al., A Bis(imidazole)-based cysteine labeling tool for metalloprotein assembly. J.Inorg.Biochem. (2023)

Release Date

2021-06-30

Peptides

Carboxypeptidase G2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Carboxypeptidase G2

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