SMTL ID : 6xjh.1

PmtCD ABC exporter without the basket domain at C2 symmetry

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 18 residues within 4Å: Chain C: Y.10, N.13, V.15, N.35, G.36, V.37, G.38, K.39, T.40, T.41, E.145 Chain D: K.115, K.119, S.121, M.122, G.123, M.124 Ligands: MG.2 17 PLIP interactions: 13 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:N.13, C:G.36, C:G.36, C:V.37, C:G.38, C:K.39, C:T.40, C:T.40, C:T.41, C:T.41, D:K.115, D:S.121, D:M.122, D:G.123 Salt bridges: C:K.39 pi-Stacking: C:Y.10, C:Y.10 AGS.3: 18 residues within 4Å: Chain C: K.115, K.119, S.121, M.122, G.123, M.124 Chain D: Y.10, N.13, V.15, N.35, G.36, V.37, G.38, K.39, T.40, T.41, E.145 Ligands: MG.4 17 PLIP interactions: 13 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:N.13, D:G.36, D:G.36, D:V.37, D:G.38, D:K.39, D:T.40, D:T.40, D:T.41, D:T.41, C:K.115, C:S.121, C:M.122, C:G.123 Salt bridges: D:K.39 pi-Stacking: D:Y.10, D:Y.10

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: T.40, E.70, D.144 Ligands: AGS.1 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.40, C:E.70 MG.4: 4 residues within 4Å: Chain D: T.40, E.70, D.144 Ligands: AGS.3 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:T.40, D:E.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeytuni, N. et al., Structural insight into the Staphylococcus aureus ATP-driven exporter of virulent peptide toxins. Sci Adv (2020)

Release Date

2020-10-14

Peptides

Phenol-soluble modulin export ABC transporter permease subunit PmtD: AB
ABC transporter ATP-binding protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Phenol-soluble modulin export ABC transporter permease subunit PmtD

ABC transporter ATP-binding protein

Related Entries With Identical Sequence