SMTL ID : 6xjn.1

Human atlastin-1 (residues 1-439) bound to GDP-Mg2+ exhibits an ordered amino terminus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: A.75, F.76, R.77, K.78, G.79, K.80, S.81, F.82, Q.148, R.217, D.218, H.271, P.272, V.276, N.279, P.280, N.281 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.77, A:K.78, A:G.79, A:K.80, A:S.81, A:S.81, A:F.82, A:Q.148, A:R.217, A:H.271, A:N.281 Water bridges: A:S.81, A:S.81, A:D.218, A:D.218 Salt bridges: A:K.80, A:D.218 pi-Cation interactions: A:H.271

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: K.80, S.81, D.146, Q.148 Ligands: GDP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kelly, C.M. et al., The hypervariable region of atlastin-1 is a site for intrinsic and extrinsic regulation. J.Cell Biol. (2021)

Release Date

2021-06-30

Peptides

Atlastin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Atlastin-1