SMTL ID : 6xjq.1 (1 other biounit)

Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

hetero-1-1-mer

Ligands

1 x V4J: 2-{[(4R)-4-hydroxyhexyl]oxy}ethyl 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate(Non-functional Binders)

V4J.1: 7 residues within 4Å: Chain A: A.15, G.16, G.17, U.42, A.43, G.45, C.46 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krochmal, D. et al., Structural basis for substrate binding and catalysis by a self-alkylating ribozyme. Nat.Chem.Biol. (2022)

Release Date

2022-01-19

Peptides

Fab HAVx Heavy Chain: B
Fab HAVx Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
H

C
L

Fab HAVx Heavy Chain

Fab HAVx Light Chain

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