SMTL ID : 6xk0.1

Albumin-dexamethasone complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x DEX: DEXAMETHASONE(Non-covalent)

DEX.1: 11 residues within 4Å: Chain A: R.208, K.211, A.212, V.215, D.323, G.327, L.346, A.349, K.350, E.353, A.481 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.212, A:V.215, A:D.323, A:A.349, A:K.350 Hydrogen bonds: A:R.208 Water bridges: A:A.481

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 6 residues within 4Å: Chain A: K.194, W.213, R.217, N.450, H.451 Ligands: MYR.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.194 Hydrogen bonds: A:R.217, A:R.217, A:N.450 Water bridges: A:K.194, A:K.194, A:K.194, A:K.221, A:R.435 Salt bridges: A:K.194, A:R.217, A:H.451, A:H.451

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.3: 13 residues within 4Å: Chain A: K.194, L.197, K.198, S.201, A.209, V.210, W.213, S.343, N.450, A.453, L.454, L.480 Ligands: FLC.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.194, A:K.198, A:W.213, A:W.213, A:W.213, A:W.213, A:N.450, A:A.453, A:L.480 Hydrogen bonds: A:S.201 Water bridges: A:K.198, A:K.198

4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 2 residues within 4Å: Ligands: UNX.5, UNX.7 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: D.131 Ligands: UNX.4, UNX.7 No protein-ligand interaction detected (PLIP) UNX.6: 2 residues within 4Å: Chain A: K.17 Ligands: UNX.7 No protein-ligand interaction detected (PLIP) UNX.7: 3 residues within 4Å: Ligands: UNX.4, UNX.5, UNX.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shabalin, I.G. et al., Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy. Iucrj (2020)

Release Date

2020-07-15

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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