SMTL ID : 6xkd.2 (1 other biounit)

Structure of ligand-bound mouse cGAMP hydrolase ENPP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 9 residues within 4Å: Chain A: L.167, Y.168, S.171, H.400, P.483, N.485, D.702, R.704, L.792 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.704

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.118, T.156, D.323, H.324 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.118, A:D.118, A:T.156, A:D.323, A:H.324 ZN.3: 5 residues within 4Å: Chain A: T.156, D.276, H.280, H.324, H.435 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.276, A:D.276, A:H.280, A:H.435

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.698, D.700, D.702, R.704, Y.705, D.706 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.698, A:D.700, A:D.702, A:R.704, A:D.706

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carozza, J.A. et al., Structure-Aided Development of Small-Molecule Inhibitors of ENPP1, the Extracellular Phosphodiesterase of the Immunotransmitter cGAMP. Cell Chem Biol (2020)

Release Date

2021-06-02

Peptides

Ectonucleotide pyrophosphatase/phosphodiesterase family member 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ectonucleotide pyrophosphatase/phosphodiesterase family member 1

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