SMTL ID : 6xmh.1

Human aldolase A wild type

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 10 residues within 4Å: Chain A: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304, H.362, Y.364 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.272, A:S.272, A:G.273, A:S.301, A:G.303, A:R.304 Water bridges: A:H.362, A:H.362 Salt bridges: A:K.230, A:R.304, A:H.362 PO4.2: 6 residues within 4Å: Chain A: K.200, Q.203, T.255, R.259 Chain B: K.13 Ligands: GOL.3 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.203 Water bridges: A:R.259 Salt bridges: A:K.200, A:R.259, B:K.13 PO4.8: 5 residues within 4Å: Chain A: K.13, Y.223 Chain B: Q.203, T.255, R.259 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Salt bridges: A:K.13, B:R.259 Hydrogen bonds: B:Q.203 Water bridges: B:Q.203, B:R.259 PO4.10: 9 residues within 4Å: Chain B: A.32, K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.272, B:S.272, B:G.273, B:S.301, B:G.303, B:R.304 Water bridges: B:K.230 Salt bridges: B:K.230, B:R.304 PO4.12: 10 residues within 4Å: Chain C: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304, H.362, Y.364 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.272, C:S.272, C:G.273, C:S.301, C:G.303, C:R.304 Water bridges: C:H.362, C:H.362 Salt bridges: C:K.230, C:R.304, C:H.362 PO4.13: 6 residues within 4Å: Chain C: K.200, Q.203, T.255, R.259 Chain D: K.13 Ligands: GOL.14 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain C Salt bridges: D:K.13, C:K.200, C:R.259 Hydrogen bonds: C:Q.203 Water bridges: C:R.259 PO4.19: 5 residues within 4Å: Chain C: K.13, Y.223 Chain D: Q.203, T.255, R.259 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Q.203 Water bridges: D:Q.203, D:R.259 Salt bridges: D:R.259, C:K.13 PO4.21: 9 residues within 4Å: Chain D: A.32, K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.272, D:S.272, D:G.273, D:S.301, D:G.303, D:R.304 Water bridges: D:K.230 Salt bridges: D:K.230, D:R.304

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: K.200, Q.203, Y.204, E.207, R.259 Chain B: K.13 Ligands: PO4.2, GOL.4 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.200, A:E.207, A:R.259, B:K.13 GOL.4: 8 residues within 4Å: Chain A: Y.204, E.207, K.208 Chain B: S.218, D.219, H.221, I.222 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.218, B:H.221 Water bridges: B:I.222, B:I.222 GOL.5: 9 residues within 4Å: Chain A: P.193, H.238, G.274, Q.275, S.276, E.279, S.356, L.357, F.358 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.238, A:G.274 GOL.6: 9 residues within 4Å: Chain A: G.121, E.122, T.123, V.151, L.152, K.153, A.163, L.192, N.361 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.123 GOL.7: 5 residues within 4Å: Chain A: K.111, Q.126 Chain D: D.129, G.130, E.133 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:K.111, D:E.133 GOL.9: 6 residues within 4Å: Chain A: S.218, D.219, H.221 Chain B: Y.204, E.207, K.208 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.218 GOL.11: 7 residues within 4Å: Chain B: E.247, A.250, M.251, A.286, K.289, C.290, P.291 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.286 GOL.14: 8 residues within 4Å: Chain C: K.200, Q.203, Y.204, E.207, R.259 Chain D: K.13 Ligands: PO4.13, GOL.15 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:K.13, C:K.200, C:E.207, C:R.259 GOL.15: 8 residues within 4Å: Chain C: Y.204, E.207, K.208 Chain D: S.218, D.219, H.221, I.222 Ligands: GOL.14 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.218, D:H.221 Water bridges: D:I.222, D:I.222 GOL.16: 9 residues within 4Å: Chain C: P.193, H.238, G.274, Q.275, S.276, E.279, S.356, L.357, F.358 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.238, C:G.274 GOL.17: 9 residues within 4Å: Chain C: G.121, E.122, T.123, V.151, L.152, K.153, A.163, L.192, N.361 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.123 GOL.18: 5 residues within 4Å: Chain B: D.129, G.130, E.133 Chain C: K.111, Q.126 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:K.111, B:E.133 GOL.20: 6 residues within 4Å: Chain C: S.218, D.219, H.221 Chain D: Y.204, E.207, K.208 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.218 GOL.22: 7 residues within 4Å: Chain D: E.247, A.250, M.251, A.286, K.289, C.290, P.291 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:A.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenton, K.D. et al., Substitutions at a rheostat position in human aldolase A cause a shift in the conformational population. Protein Sci. (2022)

Release Date

2021-07-07

Peptides

Fructose-bisphosphate aldolase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fructose-bisphosphate aldolase A