SMTL ID : 6xml.1

Human aldolase A I98C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.272, A:S.272, A:S.272, A:S.272, A:G.273, A:G.303, A:R.304 Salt bridges: A:K.230, A:R.304 PO4.2: 6 residues within 4Å: Chain A: K.200, Q.203, T.255, R.259 Chain B: K.13 Ligands: GOL.3 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.203 Water bridges: A:K.200 Salt bridges: A:K.200, A:R.259, B:K.13 PO4.6: 8 residues within 4Å: Chain B: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.272, B:S.272, B:G.273, B:S.301, B:G.303, B:R.304 Salt bridges: B:K.230 PO4.7: 6 residues within 4Å: Chain A: K.13, Y.223 Chain B: K.200, Q.203, T.255, R.259 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Water bridges: A:K.13, B:R.259 Salt bridges: A:K.13, B:K.200, B:R.259 Hydrogen bonds: B:Q.203 PO4.11: 8 residues within 4Å: Chain C: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.272, C:S.272, C:S.272, C:S.272, C:G.273, C:G.303, C:R.304 Salt bridges: C:K.230, C:R.304 PO4.12: 6 residues within 4Å: Chain C: K.200, Q.203, T.255, R.259 Chain D: K.13 Ligands: GOL.13 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Q.203 Water bridges: C:K.200 Salt bridges: C:K.200, C:R.259, D:K.13 PO4.16: 8 residues within 4Å: Chain D: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.272, D:S.272, D:G.273, D:S.301, D:G.303, D:R.304 Salt bridges: D:K.230 PO4.17: 6 residues within 4Å: Chain C: K.13, Y.223 Chain D: K.200, Q.203, T.255, R.259 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Water bridges: C:K.13, D:R.259 Salt bridges: C:K.13, D:K.200, D:R.259 Hydrogen bonds: D:Q.203

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: K.200, Q.203, Y.204, E.207, R.259 Chain B: K.13 Ligands: PO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.259 GOL.4: 9 residues within 4Å: Chain A: E.156, H.157, T.158, R.201 Chain C: E.156, H.157, T.158, R.201 Ligands: GOL.14 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.156, A:E.156 GOL.5: 6 residues within 4Å: Chain A: S.218, D.219, H.221 Chain B: Y.204, E.207, K.208 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.218, A:H.221, B:E.207 GOL.8: 7 residues within 4Å: Chain B: D.34, E.35, S.36, S.39, K.108, K.147, R.149 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.34 GOL.9: 11 residues within 4Å: Chain B: L.128, E.166, N.169, V.170, R.173 Chain C: T.124, L.128, E.166, N.169, V.170, R.173 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:N.169, B:N.169 Water bridges: C:E.166, B:E.166 GOL.10: 2 residues within 4Å: Chain B: H.81, Y.85 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.81 GOL.13: 7 residues within 4Å: Chain C: K.200, Q.203, Y.204, E.207, R.259 Chain D: K.13 Ligands: PO4.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.259 GOL.14: 9 residues within 4Å: Chain A: E.156, H.157, T.158, R.201 Chain C: E.156, H.157, T.158, R.201 Ligands: GOL.4 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.156, A:E.156 GOL.15: 6 residues within 4Å: Chain C: S.218, D.219, H.221 Chain D: Y.204, E.207, K.208 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.218, C:H.221, D:E.207 GOL.18: 7 residues within 4Å: Chain D: D.34, E.35, S.36, S.39, K.108, K.147, R.149 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.34 GOL.19: 11 residues within 4Å: Chain A: T.124, L.128, E.166, N.169, V.170, R.173 Chain D: L.128, E.166, N.169, V.170, R.173 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:N.169, A:N.169 Water bridges: D:E.166, A:E.166 GOL.20: 2 residues within 4Å: Chain D: H.81, Y.85 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenton, K.D. et al., Substitutions at a rheostat position in human aldolase A cause a shift in the conformational population. Protein Sci. (2022)

Release Date

2021-07-07

Peptides

Fructose-bisphosphate aldolase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fructose-bisphosphate aldolase A