SMTL ID : 6xmm.1

Human aldolase A I98S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304, A.305 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.272, A:S.272, A:G.273, A:S.301, A:G.303, A:R.304 Salt bridges: A:K.230 PO4.2: 5 residues within 4Å: Chain A: K.200, Q.203, T.255, R.259 Chain B: K.13 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.203 Water bridges: A:R.259 Salt bridges: A:K.200, A:R.259, B:K.13 PO4.3: 4 residues within 4Å: Chain A: K.13 Chain B: K.200, Q.203, R.259 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.203 Salt bridges: B:K.200, B:R.259, A:K.13 PO4.5: 9 residues within 4Å: Chain B: A.32, K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.272, B:G.273, B:S.301, B:G.303, B:R.304 Salt bridges: B:K.230, B:R.304 PO4.11: 9 residues within 4Å: Chain C: K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304, A.305 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.272, C:S.272, C:G.273, C:S.301, C:G.303, C:R.304 Salt bridges: C:K.230 PO4.12: 5 residues within 4Å: Chain C: K.200, Q.203, T.255, R.259 Chain D: K.13 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Q.203 Water bridges: C:R.259 Salt bridges: C:K.200, C:R.259, D:K.13 PO4.13: 4 residues within 4Å: Chain C: K.13 Chain D: K.200, Q.203, R.259 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Q.203 Salt bridges: D:K.200, D:R.259, C:K.13 PO4.15: 9 residues within 4Å: Chain D: A.32, K.230, L.271, S.272, G.273, S.301, Y.302, G.303, R.304 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.272, D:G.273, D:S.301, D:G.303, D:R.304 Salt bridges: D:K.230, D:R.304

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: S.218, D.219, H.221 Chain B: Y.204, E.207, K.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.218, A:H.221 GOL.6: 8 residues within 4Å: Chain B: D.34, E.35, S.36, S.39, K.108, K.147, R.149 Ligands: GOL.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.34, B:S.36, B:S.36, B:K.108 GOL.7: 7 residues within 4Å: Chain B: G.121, E.122, T.123, V.151, L.152, K.153, L.192 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.122, B:T.123, B:T.123, B:T.123, B:V.151, B:K.153 GOL.8: 7 residues within 4Å: Chain B: R.149, L.192, D.194, R.304, V.359, S.360 Ligands: GOL.6 No protein-ligand interaction detected (PLIP) GOL.9: 12 residues within 4Å: Chain B: T.124, T.125, L.128, E.166, N.169, V.170, R.173 Chain C: L.128, E.166, N.169, V.170, R.173 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:E.166, C:N.169, C:R.173, B:T.124, B:N.169 GOL.10: 11 residues within 4Å: Chain A: A.211, Y.214, K.215, T.260, P.262 Chain B: A.211, Y.214, R.259, T.260, V.261, P.262 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.260, A:T.260 Water bridges: A:K.215, A:K.215 GOL.14: 6 residues within 4Å: Chain C: S.218, D.219, H.221 Chain D: Y.204, E.207, K.208 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.218, C:H.221 GOL.16: 8 residues within 4Å: Chain D: D.34, E.35, S.36, S.39, K.108, K.147, R.149 Ligands: GOL.18 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.34, D:S.36, D:S.36, D:K.108 GOL.17: 7 residues within 4Å: Chain D: G.121, E.122, T.123, V.151, L.152, K.153, L.192 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.122, D:T.123, D:T.123, D:T.123, D:V.151, D:K.153 GOL.18: 7 residues within 4Å: Chain D: R.149, L.192, D.194, R.304, V.359, S.360 Ligands: GOL.16 No protein-ligand interaction detected (PLIP) GOL.19: 12 residues within 4Å: Chain A: L.128, E.166, N.169, V.170, R.173 Chain D: T.124, T.125, L.128, E.166, N.169, V.170, R.173 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:T.124, D:N.169, A:E.166, A:N.169, A:R.173 GOL.20: 11 residues within 4Å: Chain C: A.211, Y.214, K.215, T.260, P.262 Chain D: A.211, Y.214, R.259, T.260, V.261, P.262 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:T.260, D:T.260 Water bridges: C:K.215, C:K.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenton, K.D. et al., Substitutions at a rheostat position in human aldolase A cause a shift in the conformational population. Protein Sci. (2022)

Release Date

2021-07-07

Peptides

Fructose-bisphosphate aldolase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fructose-bisphosphate aldolase A