SMTL ID : 6xmo.1

Human aldolase A I98F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 11 residues within 4Å: Chain A: A.32, K.230, L.271, S.272, G.273, Y.302, G.303, R.304, A.305, H.362, Y.364 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.272, A:S.272, A:G.273, A:G.303, A:R.304 Salt bridges: A:K.230, A:R.304 PO4.2: 6 residues within 4Å: Chain A: K.200, Q.203, T.255, R.259 Chain B: K.13, Y.223 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.203 Water bridges: A:K.200 Salt bridges: A:K.200, A:R.259, B:K.13 PO4.5: 6 residues within 4Å: Chain A: K.13, Y.223 Chain B: K.200, Q.203, T.255, R.259 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.203 Salt bridges: B:K.200, B:R.259, A:K.13 PO4.8: 11 residues within 4Å: Chain B: A.32, K.230, L.271, S.272, G.273, Y.302, G.303, R.304, A.305, H.362, Y.364 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.272, B:G.273, B:G.303, B:R.304, B:H.362, B:Y.364 Salt bridges: B:K.230, B:R.304 PO4.11: 11 residues within 4Å: Chain C: A.32, K.230, L.271, S.272, G.273, Y.302, G.303, R.304, A.305, H.362, Y.364 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.272, C:S.272, C:G.273, C:G.303, C:R.304 Salt bridges: C:K.230, C:R.304 PO4.12: 6 residues within 4Å: Chain C: K.200, Q.203, T.255, R.259 Chain D: K.13, Y.223 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Q.203 Water bridges: C:K.200 Salt bridges: C:K.200, C:R.259, D:K.13 PO4.15: 6 residues within 4Å: Chain C: K.13, Y.223 Chain D: K.200, Q.203, T.255, R.259 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Q.203 Salt bridges: D:K.200, D:R.259, C:K.13 PO4.18: 11 residues within 4Å: Chain D: A.32, K.230, L.271, S.272, G.273, Y.302, G.303, R.304, A.305, H.362, Y.364 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.272, D:G.273, D:G.303, D:R.304, D:H.362, D:Y.364 Salt bridges: D:K.230, D:R.304

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: F.80, H.81, I.107, K.108, V.109, D.110, K.111, R.134, Y.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.81, A:V.109, A:R.134 GOL.4: 11 residues within 4Å: Chain A: L.128, E.166, N.169, V.170, R.173 Chain D: T.124, L.128, E.166, N.169, V.170, R.173 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:E.166, D:N.169, A:N.169 GOL.6: 9 residues within 4Å: Chain A: S.218, H.221, I.222, Y.223, L.224 Chain B: E.207, K.208, R.259, T.260 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.207, B:K.208, B:R.259 Water bridges: B:R.259, A:Y.214 GOL.7: 11 residues within 4Å: Chain A: E.207, K.208, A.211, R.259, T.260 Chain B: L.217, S.218, I.222, Y.223, L.224, E.225 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.208, A:R.259, B:S.218, B:I.222 GOL.9: 1 residues within 4Å: Chain B: P.345 1 PLIP interactions: 1 interactions with chain B Water bridges: B:A.351 GOL.10: 12 residues within 4Å: Chain A: A.211, Y.214, K.215, T.260, P.262 Chain B: A.211, Y.214, K.215, R.259, T.260, V.261, P.262 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.211, B:T.260, A:A.211 GOL.13: 9 residues within 4Å: Chain C: F.80, H.81, I.107, K.108, V.109, D.110, K.111, R.134, Y.138 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.81, C:V.109, C:R.134 GOL.14: 11 residues within 4Å: Chain B: T.124, L.128, E.166, N.169, V.170, R.173 Chain C: L.128, E.166, N.169, V.170, R.173 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:E.166, B:N.169, C:N.169 GOL.16: 9 residues within 4Å: Chain C: S.218, H.221, I.222, Y.223, L.224 Chain D: E.207, K.208, R.259, T.260 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.207, D:K.208, D:R.259 Water bridges: D:R.259, C:Y.214 GOL.17: 11 residues within 4Å: Chain C: E.207, K.208, A.211, R.259, T.260 Chain D: L.217, S.218, I.222, Y.223, L.224, E.225 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:S.218, D:I.222, C:K.208, C:R.259 GOL.19: 1 residues within 4Å: Chain D: P.345 1 PLIP interactions: 1 interactions with chain D Water bridges: D:A.351 GOL.20: 12 residues within 4Å: Chain C: A.211, Y.214, K.215, T.260, P.262 Chain D: A.211, Y.214, K.215, R.259, T.260, V.261, P.262 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:A.211, D:T.260, C:A.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenton, K.D. et al., Substitutions at a rheostat position in human aldolase A cause a shift in the conformational population. Protein Sci. (2022)

Release Date

2021-07-07

Peptides

Fructose-bisphosphate aldolase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fructose-bisphosphate aldolase A