SMTL ID : 6xmp.1

Structure of P5A-ATPase Spf1, Apo form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

12 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)

LMT.1: 10 residues within 4Å: Chain A: L.201, F.204, N.396, L.400, I.403, L.407, V.443, P.448 Ligands: LMT.2, LMT.8 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.448 LMT.2: 4 residues within 4Å: Chain A: L.70, M.74 Ligands: LMT.1, LMT.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.78 LMT.3: 10 residues within 4Å: Chain A: F.58, V.59, T.63, S.66, F.207, L.211, L.214, S.429, L.433, I.436 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.214, A:L.433, A:I.436 LMT.4: 8 residues within 4Å: Chain A: F.58, G.62, V.65, S.66, F.207, L.214 Ligands: LMT.5, LMT.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.58 LMT.5: 9 residues within 4Å: Chain A: I.69, A.197, V.198, V.206 Ligands: LMT.4, LMT.6, LMT.7, LMT.8, LMT.9 No protein-ligand interaction detected (PLIP) LMT.6: 7 residues within 4Å: Chain A: I.69, M.72, L.73, A.76, K.82 Ligands: LMT.5, LMT.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.76 LMT.7: 6 residues within 4Å: Chain A: M.190, F.193, V.206, L.225, I.229 Ligands: LMT.5 No protein-ligand interaction detected (PLIP) LMT.8: 11 residues within 4Å: Chain A: S.66, I.69, L.70, W.77, P.200, V.203, F.204, F.207 Ligands: LMT.1, LMT.2, LMT.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.70 LMT.9: 5 residues within 4Å: Chain A: A.210, L.214 Ligands: LMT.4, LMT.5, LMT.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.214 LMT.10: 9 residues within 4Å: Chain A: Y.1004, S.1007, I.1008, M.1011, V.1074, T.1077, T.1078, Y.1081 Ligands: LMT.12 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.1008 LMT.11: 10 residues within 4Å: Chain A: F.409, L.1063, F.1066, A.1067, I.1070, A.1071, V.1074, Y.1075, T.1078 Ligands: LMT.12 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.1070 LMT.12: 7 residues within 4Å: Chain A: F.409, I.412, Y.1004, I.1070, V.1074 Ligands: LMT.10, LMT.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.412, A:I.1070

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McKenna, M.J. et al., The endoplasmic reticulum P5A-ATPase is a transmembrane helix dislocase. Science (2020)

Release Date

2020-09-23

Peptides

P5A-type ATPase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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P5A-type ATPase

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