SMTL ID : 6xnx.1

Structure of RAG1 (R848M/E649V)-RAG2-DNA Strand Transfer Complex (Dynamic-Form)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: G.343, M.344 Chain F: G.45, C.46 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.343 MG.2: 3 residues within 4Å: Chain A: E.404, D.450 Chain G: C.16 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.404, A:D.450, A:D.450 MG.4: 6 residues within 4Å: Chain C: G.343, E.404, D.450 Chain E: C.35 Chain H: C.16 Ligands: MG.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.404, C:D.450 MG.6: 6 residues within 4Å: Chain C: G.343, E.704 Chain E: G.34, C.35 Chain H: C.16 Ligands: MG.4 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:G.343

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: C.469, L.471, C.472, H.679, H.684 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.469, A:C.472, A:H.679, A:H.684 ZN.5: 5 residues within 4Å: Chain C: C.469, L.471, C.472, H.679, H.684 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.469, C:C.472, C:H.679, C:H.684

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase. Embo J. (2020)

Release Date

2020-08-26

Peptides

V(D)J recombination-activating protein 1: AC
V(D)J recombination-activating protein 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

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