SMTL ID : 6xom.1

DCN1 bound to 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: E.35, I.53, G.54, D.94, F.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.53, A:D.94, A:F.128

1 x H8V: (2R)-N-[(2S)-2-cyclohexyl-2-({N-propanoyl-3-[6-(propan-2-yl)-1,3-benzothiazol-2-yl]-L-alanyl}amino)ethyl]-2-methyl-4-(morpholin-4-yl)butanamide(Covalent)

H8V.2: 22 residues within 4Å: Chain A: I.210, I.213, F.216, P.224, A.225, S.226, V.229, L.230, I.232, A.233, F.236, A.238, T.240, Q.241, C.242, E.243, F.244, F.291, M.304, A.307, Y.308, L.311 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.216, A:A.225, A:V.229, A:L.230, A:A.233, A:F.244, A:F.291, A:A.307, A:Y.308, A:L.311 Hydrogen bonds: A:P.224, A:Q.241, A:C.242, A:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, H. et al., Selective inhibition of cullin 3 neddylation through covalent targeting DCN1 protects mice from acetaminophen-induced liver toxicity. Nat Commun (2021)

Release Date

2021-06-02

Peptides

Lysozyme, DCN1-like protein 1 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme, DCN1-like protein 1 chimera

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