SMTL ID : 6xon.1

DCN1 bound to inhibitor 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x H9M: (2S)-N-[(2S)-2-cyclohexyl-2-({N-propanoyl-3-[6-(propan-2-yl)-1,3-benzothiazol-2-yl]-L-alanyl}amino)ethyl]-4-(dimethylamino)-2-methylbutanamide(Covalent)

H9M.1: 22 residues within 4Å: Chain A: I.213, F.216, P.224, A.225, S.226, V.229, L.230, I.232, A.233, F.236, A.238, T.240, Q.241, C.242, E.243, F.244, F.291, N.294, M.304, A.307, Y.308, L.311 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.216, A:A.225, A:V.229, A:L.230, A:I.232, A:A.233, A:Q.241, A:F.244, A:F.291, A:A.307, A:L.311 Hydrogen bonds: A:P.224, A:Q.241, A:Q.241, A:C.242, A:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, H. et al., Selective inhibition of cullin 3 neddylation through covalent targeting DCN1 protects mice from acetaminophen-induced liver toxicity. Nat Commun (2021)

Release Date

2021-06-02

Peptides

Lysozyme DCN1-like protein 1 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme DCN1-like protein 1 chimera

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