SMTL ID : 6xp9.2 (1 other biounit)

STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN BOUND TETHERED WITH SRC co-activator peptide IN COMPLEX WITH (S,S)-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: T.168, K.209, L.213, H.214, E.215, Y.218 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.209, A:L.213, A:E.215 Water bridges: A:E.215

1 x QCG: (2S)-tert-butoxy[7-(8-fluoro-5-methyl-3,4-dihydro-2H-1-benzopyran-6-yl)-5-methyl-2-phenylpyrazolo[1,5-a]pyrimidin-6-yl]acetic acid(Non-covalent)

QCG.2: 16 residues within 4Å: Chain A: V.89, L.91, Y.103, L.117, H.120, M.121, M.124, S.125, Q.163, F.166, W.177, C.179, Y.184, M.201, L.202, H.205 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.89, A:V.89, A:L.91, A:Y.103, A:L.117, A:F.166, A:W.177, A:W.177, A:W.177, A:W.177, A:W.177, A:Y.184, A:Y.184, A:Y.184, A:M.201 Salt bridges: A:H.285 Halogen bonds: A:M.121, A:S.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaprakasam, P. et al., Structure-based amelioration of PXR transactivation in a novel series of macrocyclic allosteric inhibitors of HIV-1 integrase. Bioorg.Med.Chem.Lett. (2020)

Release Date

2020-09-23

Peptides

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1 fusion: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1 fusion

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