- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 6 x IDP: INOSINE-5'-DIPHOSPHATE(Non-covalent)
IDP.2: 12 residues within 4Å:- Chain A: K.20, Y.60, L.63, F.68, L.72, R.96, T.102, V.120, G.121, N.123
- Chain F: E.160
- Ligands: MG.1
18 PLIP interactions:2 interactions with chain F, 16 interactions with chain A- Water bridges: F:E.160, F:E.160, A:Y.60, A:R.96, A:R.96, A:R.96, A:R.113, A:R.113, A:N.123, A:H.126, A:G.127
- Hydrogen bonds: A:K.20, A:R.113, A:N.123, A:N.123
- Salt bridges: A:R.96
- pi-Stacking: A:F.68, A:F.68
IDP.4: 12 residues within 4Å:- Chain B: K.20, Y.60, L.63, F.68, L.72, R.96, T.102, V.120, G.121, N.123
- Chain D: E.160
- Ligands: MG.3
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:K.20, B:N.123, B:N.123
- Water bridges: B:K.20, B:R.113, B:G.127, D:E.160
- Salt bridges: B:R.96
- pi-Stacking: B:F.68, B:F.68
IDP.6: 12 residues within 4Å:- Chain B: E.160
- Chain C: K.20, Y.60, L.63, F.68, L.72, R.96, T.102, V.120, G.121, N.123
- Ligands: MG.5
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:K.20, C:N.123, C:N.123
- Water bridges: C:K.20, C:R.96, C:R.113, C:R.113, C:H.126, C:H.126, C:H.126, C:H.126, B:E.160
- Salt bridges: C:R.96
- pi-Stacking: C:F.68, C:F.68
IDP.8: 12 residues within 4Å:- Chain C: E.160
- Chain D: K.20, Y.60, L.63, F.68, L.72, R.96, T.102, V.120, G.121, N.123
- Ligands: MG.7
18 PLIP interactions:16 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:K.20, D:T.102, D:R.113, D:N.123, D:N.123
- Water bridges: D:K.20, D:R.96, D:R.96, D:R.96, D:R.113, D:R.113, D:N.123, D:G.127, C:E.160, C:E.160
- Salt bridges: D:R.96
- pi-Stacking: D:F.68, D:F.68
IDP.10: 12 residues within 4Å:- Chain A: E.160
- Chain E: K.20, Y.60, L.63, F.68, L.72, R.96, T.102, V.120, G.121, N.123
- Ligands: MG.9
14 PLIP interactions:13 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:K.20, E:T.102, E:N.123, E:N.123
- Water bridges: E:Y.60, E:H.126, E:H.126, E:H.126, E:H.126, E:G.127, A:E.160
- Salt bridges: E:R.96
- pi-Stacking: E:F.68, E:F.68
IDP.12: 12 residues within 4Å:- Chain E: E.160
- Chain F: K.20, Y.60, L.63, F.68, L.72, R.96, T.102, V.120, G.121, N.123
- Ligands: MG.11
13 PLIP interactions:12 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:K.20, F:T.102, F:N.123, F:N.123
- Water bridges: F:K.20, F:R.96, F:R.113, F:R.113, F:G.127, E:E.160
- Salt bridges: F:R.96
- pi-Stacking: F:F.68, F:F.68
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, S. et al., Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J. (2021)
- Release Date
- 2020-11-04
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 6 x IDP: INOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, S. et al., Nucleoside selectivity of Aspergillus fumigatus nucleoside-diphosphate kinase. Febs J. (2021)
- Release Date
- 2020-11-04
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C