SMTL ID : 6xqi.1 (1 other biounit)

Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-2-1-mer

Ligands

1 x ASN- PRO- LEU- GLU- PHE- LEU: ASN-PRO-LEU-GLU-PHE-LEU(Non-covalent)

ASN-PRO-LEU-GLU-PHE-LEU.1: 9 residues within 4Å: Chain B: L.9, K.13, V.17, R.22, L.25, H.26, G.29, I.32, Y.33 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.9, B:K.13, B:V.17, B:L.25, B:H.26, B:I.32, B:Y.33 Hydrogen bonds: B:K.13, B:K.13, B:R.22, B:H.26 pi-Cation interactions: B:K.13

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.19, H.57, C.62, H.64 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.19, A:H.57, A:C.62, A:H.64 ZN.3: 4 residues within 4Å: Chain B: H.19, H.57, C.62, H.64 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.19, B:H.57, B:C.62, B:H.64, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byeon, I.L. et al., Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A. Nat Commun (2021)

Release Date

2021-08-11

Peptides

Protein Vpr: AB
UV excision repair protein RAD23 homolog A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

Protein Vpr

UV excision repair protein RAD23 homolog A

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