SMTL ID : 6xsw.1 (3 other biounits)

Structure of the Notch3 NRR in complex with an antibody Fab Fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain C: K.55, D.58, R.60, D.62, D.73, D.76 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:K.55, C:D.58, C:R.60, C:D.62, C:D.76 CA.2: 6 residues within 4Å: Chain C: H.138, D.141, R.143, D.145, D.156, D.159 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.141, C:R.143, C:D.145, C:D.156, C:D.159 CA.3: 6 residues within 4Å: Chain C: L.96, N.99, R.101, D.103, D.114, D.117 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:L.96, C:R.101, C:D.103, C:D.114, C:D.117

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain C: W.94, R.95, N.98, R.265 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.265, C:R.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geles, K.G. et al., NOTCH3-targeted antibody drug conjugates regress tumors by inducing apoptosis in receptor cells and through transendocytosis into ligand cells. Cell Rep Med (2021)

Release Date

2021-07-21

Peptides

Anti-N3 Fab Heavy Chain: A
Anti-N3 Fab Light Chain: B
Neurogenic locus notch homolog protein 3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Anti-N3 Fab Heavy Chain

Anti-N3 Fab Light Chain

Neurogenic locus notch homolog protein 3

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