SMTL ID : 6xt8.2 (1 other biounit)

Crystal structure of haloalkane dehalogenase variant DhaA115 domain-swapped dimer type-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: N.41, W.107, F.168 Chain B: F.205, P.206 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: F.205, P.206, L.209 Chain B: N.41, W.107, F.168 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: G.5, T.6, G.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.6, A:G.7 Water bridges: A:G.5, A:G.7 GOL.3: 8 residues within 4Å: Chain A: F.8, S.44, Y.46, G.70, K.71, H.188, E.191, P.192 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.44, A:D.65, A:K.71, A:H.188, A:E.191, A:E.191 GOL.4: 6 residues within 4Å: Chain A: D.89, E.93, W.115, R.118, N.119, R.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.119, A:R.122 Water bridges: A:D.89

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 2 residues within 4Å: Chain A: F.144 Chain B: P.243 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markova, K. et al., Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers. Acs Catalysis (2021)

Release Date

2021-01-27

Peptides

Haloalkane dehalogenase variant DhaA115 domain-swapped dimer type-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Haloalkane dehalogenase variant DhaA115 domain-swapped dimer type-2

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