SMTL ID : 6xtc.1 (1 other biounit)

Crystal structure of haloalkane dehalogenase variant DhaA177 domain-swapped dimer type-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: P.260, N.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.261 Water bridges: A:N.261, A:C.262, A:C.262, A:C.262 GOL.2: 1 residues within 4Å: Chain A: R.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.118 Water bridges: A:D.89

23 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: W.228, Q.231, S.232, P.233 Chain B: P.120 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: K.263, R.288 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.204 Chain B: F.80 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: E.214, P.215, A.216 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: M.226, H.230 Chain B: R.133, P.134 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: L.77, R.86, Y.87 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: D.164, P.196, R.199 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: W.138, R.153 Chain B: I.211, E.214 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain A: R.133, P.134 Chain B: M.226, H.230 Ligand excluded by PLIP SO4.12: 1 residues within 4Å: Chain A: R.288 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: G.5, T.6, G.7 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain A: H.188 Chain B: G.7, F.8 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain A: I.211 Chain B: W.138, R.153 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: P.260, N.261 Ligand excluded by PLIP SO4.17: 1 residues within 4Å: Chain B: R.288 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: L.77, R.86, Y.87 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain A: F.80 Chain B: R.204 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain B: G.213, E.214, P.215, A.216 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain A: P.120 Chain B: W.228, Q.231, S.232, P.233, V.234 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain B: D.26, V.27, G.28, R.30 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain B: D.139, W.141, E.143, R.146 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain B: P.248, P.249, A.250 Ligand excluded by PLIP SO4.25: 1 residues within 4Å: Chain B: R.118 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markova, K. et al., Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers. Acs Catalysis (2021)

Release Date

2021-01-27

Peptides

Haloalkane dehalogenase variant DhaA177 domain-swapped dimer type-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Haloalkane dehalogenase variant DhaA177 domain-swapped dimer type-3

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