SMTL ID : 6xtz.1

Structure of Dally-like protein in complex with O-palmitoleoyl serine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.9, S.11, A.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.9

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 9 residues within 4Å: Chain A: K.232, Y.250, N.485, G.486, H.487, Y.492, H.494, P.504, E.505 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.494

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: V.137, D.138, L.139, K.194, D.541 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.137, A:L.139 GOL.4: 6 residues within 4Å: Chain A: T.202, Q.205, A.206, T.209, A.529, H.532 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.201, A:R.201 GOL.5: 5 residues within 4Å: Chain A: I.113, R.116, N.117, K.153, V.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.116 GOL.6: 4 residues within 4Å: Chain A: D.89, I.90, A.93, I.441 No protein-ligand interaction detected (PLIP)

1 x O18: O-palmitoleoyl serine(Non-covalent)

O18.7: 11 residues within 4Å: Chain A: L.94, L.95, S.98, Q.101, F.125, F.146, L.189, I.289, V.290, V.293, P.440 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.95, A:F.125, A:F.125, A:F.146, A:L.189, A:I.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGough, I.J. et al., Glypicans shield the Wnt lipid moiety to enable signalling at a distance. Nature (2020)

Release Date

2020-07-29

Peptides

Dally-like, isoform A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dally-like, isoform A