- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.4: 6 residues within 4Å:- Chain A: G.220, T.221, M.222, M.391, W.393, Y.407
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.393, A:Y.407, A:Y.407
BME.5: 3 residues within 4Å:- Chain A: T.238, Y.239, S.242
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.242, A:S.242
BME.6: 3 residues within 4Å:- Chain A: K.335, S.371, Y.374
No protein-ligand interaction detected (PLIP)BME.7: 4 residues within 4Å:- Chain A: Y.60, I.118, D.119, G.121
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.121
BME.8: 3 residues within 4Å:- Chain A: S.242, K.245, K.246
No protein-ligand interaction detected (PLIP)BME.9: 8 residues within 4Å:- Chain A: I.227, S.228, P.229, I.230, I.415, P.425, I.426, N.427
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.426
BME.18: 3 residues within 4Å:- Chain D: P.229, I.230, N.419
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.230, D:I.230
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 3 residues within 4Å:- Chain A: F.312
- Chain D: F.312, L.338
No protein-ligand interaction detected (PLIP)GOL.11: 3 residues within 4Å:- Chain A: P.229, I.230, N.419
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.230, A:I.230, A:N.419
GOL.12: 2 residues within 4Å:- Chain A: K.111, D.115
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.111, A:K.111
- Water bridges: A:D.115, A:D.115
GOL.13: 7 residues within 4Å:- Chain A: I.145, N.146, S.147, I.148, P.149, N.431, S.433
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.431, A:S.433
GOL.14: 4 residues within 4Å:- Chain A: D.194, K.218, W.258, D.259
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.218, A:K.218, A:D.259, A:D.259
- Water bridges: A:D.194, A:D.194
GOL.19: 7 residues within 4Å:- Chain D: I.227, S.228, P.229, I.230, I.415, P.425, I.426
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.228, D:I.230, D:I.426
- Water bridges: D:N.419
GOL.20: 7 residues within 4Å:- Chain D: K.141, R.394, L.410, G.413, I.414, F.440, L.441
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:K.141, D:I.414, D:L.441
- Water bridges: D:R.394, D:L.441
- 2 x CAC: CACODYLATE ION(Non-covalent)
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Golovinas, E. et al., Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT. To be published
- Release Date
- 2021-02-03
- Peptides
- Piwi protein: AD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CAC: CACODYLATE ION(Non-covalent)
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Golovinas, E. et al., Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT. To be published
- Release Date
- 2021-02-03
- Peptides
- Piwi protein: AD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
B