SMTL ID : 6xv9.2 (1 other biounit)

Crystal structure of the kinase domain of human c-KIT in complex with a type-II inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.38 Å

Oligo State

monomer

Ligands

1 x O35: ~{N}-[3-[(dimethylamino)methyl]-5-methyl-phenyl]-2-[3-methoxy-5-(7-methoxyquinolin-4-yl)oxy-pyridin-2-yl]ethanamide(Non-covalent)

O35.1: 25 residues within 4Å: Chain A: L.49, V.57, A.75, V.76, K.77, E.94, V.97, L.98, I.107, V.108, V.122, T.124, E.125, Y.126, C.127, C.128, G.130, C.182, I.183, H.184, L.193, I.202, C.203, D.204, F.205 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.49, A:L.49, A:V.57, A:A.75, A:K.77, A:L.98, A:I.107, A:Y.126, A:L.193, A:L.193, A:D.204, A:F.205 Hydrogen bonds: A:K.77, A:E.94, A:C.127, A:D.204 Salt bridges: A:D.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McAulay, K. et al., Alkynyl Benzoxazines and Dihydroquinazolines as Cysteine Targeting Covalent Warheads and Their Application in Identification of Selective Irreversible Kinase Inhibitors. J.Am.Chem.Soc. (2020)

Release Date

2020-05-27

Peptides

Mast/stem cell growth factor receptor Kit,Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mast/stem cell growth factor receptor Kit,Mast/stem cell growth factor receptor Kit

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