SMTL ID : 6xwe.1

Crystal structure of LYK3 ectodomain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: S.19, I.20, R.23, N.24, F.28, Y.82, K.85, Y.97 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 7 residues within 4Å: Chain A: F.110, N.111, S.112, Y.113, K.123, I.124, N.125 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.3: 3 residues within 4Å: Chain A: N.177, S.179, I.180 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.179 Hydrogen bonds: A:I.180

1 x CCN: ACETONITRILE(Non-functional Binders)

CCN.4: 3 residues within 4Å: Chain A: D.48, V.49, K.161 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bozsoki, Z. et al., Ligand-recognizing motifs in plant LysM receptors are major determinants of specificity. Science (2020)

Release Date

2020-08-12

Peptides

LysM domain receptor-like kinase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LysM domain receptor-like kinase 3