SMTL ID : 6xwf.1

Crystal structure of an NCoR1BBD2-BCL6BTB chimera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: L.6, Y.7, L.8 Chain B: F.130 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.6, A:L.8, B:F.130 MPD.3: 4 residues within 4Å: Chain A: F.130 Chain B: L.6, Y.7, L.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.6, B:L.8, A:F.130

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: M.120, E.121, H.122, V.123 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: M.120, E.121, H.122, V.123 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zacharchenko, T. et al., Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone. Iucrj (2021)

Release Date

2020-12-02

Peptides

B-cell lymphoma 6 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

B-cell lymphoma 6 protein

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