SMTL ID : 6xyr.1

Structure of the T4Lnano fusion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: D.233, D.235, D.237, T.239, I.240, T.241, E.244 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.233, A:D.237, A:T.239, A:E.244, H2O.2 CA.2: 7 residues within 4Å: Chain A: D.269, D.271, N.273, T.275, I.276, D.277, E.280 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.269, A:D.271, A:T.275, A:E.280, H2O.2 CA.3: 9 residues within 4Å: Chain A: D.342, I.343, D.344, G.345, D.346, Q.348, V.349, N.350, E.353 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.342, A:Q.348, A:E.353, A:E.353, H2O.3 CA.4: 7 residues within 4Å: Chain A: D.306, D.308, N.310, Y.312, I.313, S.314, E.317 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.306, A:D.308, A:E.317, A:E.317, H2O.4 CA.5: 6 residues within 4Å: Chain A: F.149, T.150, N.151, S.152, N.167 Ligands: GOL.7 No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 10 residues within 4Å: Chain A: E.34, E.35, I.38, V.106, V.110, Y.123, A.128, R.131, C.132, I.135 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.35, A:E.35, A:A.128 Water bridges: A:E.35 GOL.7: 5 residues within 4Å: Chain A: G.148, F.149, S.171, R.172 Ligands: CA.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.148, A:R.172 GOL.8: 6 residues within 4Å: Chain A: I.44, D.45, E.46, G.47 Ligands: GOL.9, GOL.10 No protein-ligand interaction detected (PLIP) GOL.9: 9 residues within 4Å: Chain A: D.45, Q.176, T.177, P.178, N.179, R.180, R.183 Ligands: GOL.8, GOL.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.179, A:N.179, A:R.180 GOL.10: 7 residues within 4Å: Chain A: I.44, D.45, N.179, R.180, R.183 Ligands: GOL.8, GOL.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.45, A:R.183, A:R.183

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 2 residues within 4Å: Chain A: R.154, R.160 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain A: S.125, L.126, D.127, R.130, K.159, W.161 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collu, G. et al., Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology. Structure (2022)

Release Date

2020-12-09

Peptides

T4Lnano,Endolysin,Calmodulin,Endolysin,Calmodulin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T4Lnano,Endolysin,Calmodulin,Endolysin,Calmodulin-1