SMTL ID : 6xyx.1

Crystal structure of the BCL6 BTB domain in complex with the NCoR1 BBD corepressor peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: T.45 Chain B: T.45 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:T.45, B:T.45 Hydrogen bonds: B:T.45 NA.3: 2 residues within 4Å: Chain B: Q.39, R.41 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.39

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Q.5 Chain B: R.91, N.93 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.91, B:N.93, B:N.93, A:Q.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zacharchenko, T. et al., Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone. Iucrj (2021)

Release Date

2020-12-02

Peptides

B-cell lymphoma 6 protein: AB
Nuclear receptor corepressor 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

B-cell lymphoma 6 protein

Nuclear receptor corepressor 1

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