SMTL ID : 6y0f.1 (1 other biounit)

Structure of human FAPalpha in complex with linagliptin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

homo-dimer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.14, G.15, T.16 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain B: N.151, E.190, N.192, T.194, D.195 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 8 residues within 4Å: Chain B: V.277, N.279, E.306, S.307, R.308, R.555, D.636, D.637 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.637

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 3 residues within 4Å: Chain B: N.14, G.15, T.16 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 6 residues within 4Å: Chain A: N.151, E.190, N.192, T.194, D.195, R.228 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.192, A:T.194, A:D.195, A:R.228 NAG.6: 6 residues within 4Å: Chain A: V.277, N.279, E.306, S.307, R.308, R.555 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.279 NAG.7: 1 residues within 4Å: Chain A: N.644 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain B: D.38, N.40, N.57 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.38, B:N.40, B:N.57

2 x 356: 8-[(3R)-3-Aminopiperidin-1-yl]-7-but-2-yn-1-yl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]-3,7-dihydro-1H-purine-2,6-d ione(Non-covalent)

356.8: 15 residues within 4Å: Chain A: R.88, E.168, E.169, F.315, Y.506, W.586, W.588, S.589, Y.590, V.615, Y.621, Y.625, N.669, V.670, Y.710 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.586, A:W.588, A:W.588, A:V.615, A:Y.621, A:V.670 Hydrogen bonds: A:E.169, A:Y.590 pi-Stacking: A:Y.506 356.10: 14 residues within 4Å: Chain B: R.88, E.168, E.169, Y.506, W.586, W.588, S.589, Y.590, V.615, Y.621, Y.625, N.669, V.670, Y.710 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:E.168, B:W.586, B:W.588, B:W.588, B:V.615, B:Y.621, B:V.670 Hydrogen bonds: B:E.168, B:E.169, B:Y.506, B:Y.590, B:Y.621

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nar, H. et al., Structure of human FAPalpha in complex with linagliptin. To Be Published

Release Date

2021-02-17

Peptides

Prolyl endopeptidase FAP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Prolyl endopeptidase FAP

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