SMTL ID : 6y0n.1

Arginine hydroxylase VioC in complex with Arg, 2OG and Fe under anaerobic environment using FT-SSX methods

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x ARG: ARGININE(Non-covalent)

ARG.1: 17 residues within 4Å: Chain A: Q.137, L.156, V.157, S.158, L.165, G.166, H.168, E.170, D.222, S.224, D.268, G.269, D.270, F.271, R.334 Ligands: AKG.2, FE.3 12 PLIP interactions: 11 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:L.165 Hydrogen bonds: A:Q.137, A:L.156, A:S.158, A:S.158, A:E.170, A:D.270, R.1 Water bridges: A:G.166 Salt bridges: A:D.268, A:D.270, A:R.334

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 16 residues within 4Å: Chain A: V.146, S.158, L.165, H.168, E.170, V.181, L.183, T.194, H.316, G.317, R.318, R.330, L.332, R.334 Ligands: ARG.1, FE.3 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:L.165 Hydrogen bonds: A:E.170, A:T.194, R.1 Salt bridges: A:H.316, A:R.330, A:R.334

1 x FE: FE (III) ION(Non-covalent)

FE.3: 5 residues within 4Å: Chain A: H.168, E.170, H.316 Ligands: ARG.1, AKG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.168, A:E.170, A:H.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rabe, P. et al., Anaerobic fixed-target serial crystallography. Iucrj (2020)

Release Date

2020-09-09

Peptides

Alpha-ketoglutarate-dependent L-arginine hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent L-arginine hydroxylase

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