SMTL ID : 6y0s.1

X-ray structure of Lactobacillus brevis alcohol dehydrogenase mutant T102E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-tetramer

Ligands

18 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: A.185, D.188 Chain C: R.219, M.224 No protein-ligand interaction detected (PLIP) MG.2: 5 residues within 4Å: Chain A: G.145, A.146, D.190, V.191, R.192 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.146, H2O.8, H2O.11 MG.3: 6 residues within 4Å: Chain A: T.26, G.48, R.49, H.50, V.53, G.54 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.26, H2O.13 MG.4: 2 residues within 4Å: Chain B: R.133, L.134 No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain B: T.26, G.48, R.49, H.50, V.53 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain B: D.190, V.191, R.192 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain B: R.133, Q.137 No protein-ligand interaction detected (PLIP) MG.8: 5 residues within 4Å: Chain B: L.27, G.28, T.203, P.204, L.205 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain B: V.158, Q.262 Chain C: V.158, Q.262 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:Q.262, B:Q.262, H2O.18, H2O.22, H2O.22, H2O.23 MG.10: 4 residues within 4Å: Chain A: R.219, M.224 Chain C: A.185, D.188 No protein-ligand interaction detected (PLIP) MG.11: 5 residues within 4Å: Chain C: G.145, A.146, D.190, V.191, R.192 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:A.146, H2O.38, H2O.40 MG.12: 6 residues within 4Å: Chain C: T.26, G.48, R.49, H.50, V.53, G.54 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:T.26, H2O.42 MG.13: 2 residues within 4Å: Chain D: R.133, L.134 No protein-ligand interaction detected (PLIP) MG.14: 5 residues within 4Å: Chain D: T.26, G.48, R.49, H.50, V.53 No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain D: D.190, V.191, R.192 No protein-ligand interaction detected (PLIP) MG.16: 2 residues within 4Å: Chain D: R.133, Q.137 No protein-ligand interaction detected (PLIP) MG.17: 5 residues within 4Å: Chain D: L.27, G.28, T.203, P.204, L.205 No protein-ligand interaction detected (PLIP) MG.18: 4 residues within 4Å: Chain A: V.158, Q.262 Chain D: V.158, Q.262 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: A:Q.262, D:Q.262, H2O.48, H2O.51, H2O.52, H2O.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grob, P. et al., Crystal Contact Engineering Enables Efficient Capture and Purification of an Oxidoreductase by Technical Crystallization. Biotechnol J (2020)

Release Date

2020-02-19

Peptides

R-specific alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
AAA

D
BBB

R-specific alcohol dehydrogenase