SMTL ID : 6y0w.1

Fucosylated antimicrobial linear peptide cFucRH46D in complex with the fucose binding lectin LecB from Pseudomonas aeruginosa at 2.1 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-2-2-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.96, D.100, D.102, D.105 Ligands: CA.2, ZDC.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.96, A:E.96, A:D.100, A:D.102, A:D.105 CA.2: 7 residues within 4Å: Chain A: N.22, D.102, N.104, D.105 Chain C: G.115 Ligands: CA.1, ZDC.3 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Metal complexes: A:N.22, A:D.102, A:D.105, C:G.115 CA.4: 6 residues within 4Å: Chain C: E.96, D.100, D.102, D.105 Ligands: CA.5, ZDC.6 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.96, C:E.96, C:D.100, C:D.102, C:D.105 CA.5: 7 residues within 4Å: Chain A: G.115 Chain C: N.22, D.102, N.104, D.105 Ligands: CA.4, ZDC.6 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Metal complexes: A:G.115, C:N.22, C:D.102, C:D.105

2 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Post Translational Modification)

ZDC.3: 16 residues within 4Å: Chain A: N.22, S.23, S.24, T.46, E.96, D.97, D.100, D.102, D.105 Chain B: L.1, Y.2, K.3, H.4 Chain C: G.115 Ligands: CA.1, CA.2 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:T.46 Hydrogen bonds: A:S.24, A:S.24, A:D.100, A:D.105, C:G.115 ZDC.6: 15 residues within 4Å: Chain A: G.115 Chain C: N.22, S.23, S.24, E.96, D.97, D.100, D.102, D.105 Chain D: L.1, Y.2, K.3, H.4 Ligands: CA.4, CA.5 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.24, C:D.100, C:D.105, A:G.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baeriswyl, S. et al., Fucosylated antimicrobial linear peptide cFucRH46D in complex with the fucose binding lectin LecB from Pseudomonas aeruginosa at 2.1 Angstrom resolution. To Be Published

Release Date

2021-02-17

Peptides

Fucose-binding lectin: AC
cFucRH46D: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

Fucose-binding lectin

cFucRH46D

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