SMTL ID : 6y12.1

Arginine hydroxylase VioC in complex with (3S)-OH-Arg, succinate and Fe after oxygen exposure using FT-SSX methods

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 15 residues within 4Å: Chain A: V.146, S.158, L.165, H.168, E.170, L.183, T.194, H.316, G.317, R.318, R.330, L.332, R.334 Ligands: FE.2, ZZU.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.194 Salt bridges: A:H.168, A:H.316, A:R.330, A:R.334

1 x FE: FE (III) ION(Non-covalent)

FE.2: 6 residues within 4Å: Chain A: H.168, E.170, H.316, R.334 Ligands: SIN.1, ZZU.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.168, A:E.170, A:H.316

1 x ZZU: (2S,3S)-3-HYDROXYARGININE(Non-covalent)

ZZU.3: 16 residues within 4Å: Chain A: Q.137, L.156, V.157, S.158, L.165, H.168, E.170, D.171, D.222, S.224, D.268, D.270, F.271, R.334 Ligands: SIN.1, FE.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.165 Hydrogen bonds: A:Q.137, A:L.156, A:S.158, A:E.170, A:R.334 Water bridges: A:G.166 Salt bridges: A:D.268, A:D.270, A:R.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rabe, P. et al., Anaerobic fixed-target serial crystallography. Iucrj (2020)

Release Date

2020-09-09

Peptides

Alpha-ketoglutarate-dependent L-arginine hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent L-arginine hydroxylase

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