SMTL ID : 6y15.1

X-ray structure of Lactobacillus brevis alcohol dehydrogenase mutant T102E_Q126K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

56 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: N.99, N.100, A.101, N.124, V.128, M.151, K.170, V.173 Ligand excluded by PLIP EDO.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: R.49, H.50, S.51, Q.71 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: E.77, W.80, T.81, F.130, R.133, L.134 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: G.102, I.103, Y.166, K.170 Ligand excluded by PLIP EDO.6: 8 residues within 4Å: Chain A: G.24, T.47, G.48, R.49, H.72, D.73, S.74, A.101 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: P.210, G.211, E.214 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: E.214, Q.218 Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: E.213, E.214 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: E.213, H.226, I.227 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: K.59, G.62, T.63, P.64 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: F.69, F.70, Q.71 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: T.220, K.221, Y.259 Chain D: Q.262 Ligands: EDO.58 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain A: C.184, A.185, D.188, Y.189, D.190, V.191 Chain C: M.224 Ligand excluded by PLIP EDO.16: 8 residues within 4Å: Chain B: N.99, N.100, A.101, N.124, V.128, M.151, K.170, V.173 Ligand excluded by PLIP EDO.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain B: R.49, H.50, S.51, Q.71 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain B: E.77, W.80, T.81, F.130, R.133, L.134 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain B: G.102, I.103, Y.166, K.170 Ligand excluded by PLIP EDO.21: 8 residues within 4Å: Chain B: G.24, T.47, G.48, R.49, H.72, D.73, S.74, A.101 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain B: P.210, G.211, E.214 Ligand excluded by PLIP EDO.23: 2 residues within 4Å: Chain B: E.214, Q.218 Ligand excluded by PLIP EDO.24: 2 residues within 4Å: Chain B: E.213, E.214 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain B: E.213, H.226, I.227 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain B: K.59, G.62, T.63, P.64 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain B: F.69, F.70, Q.71 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain B: T.220, K.221, Y.259 Chain C: Q.262 Ligands: EDO.43 Ligand excluded by PLIP EDO.29: 7 residues within 4Å: Chain B: C.184, A.185, D.188, Y.189, D.190, V.191 Chain D: M.224 Ligand excluded by PLIP EDO.31: 8 residues within 4Å: Chain C: N.99, N.100, A.101, N.124, V.128, M.151, K.170, V.173 Ligand excluded by PLIP EDO.32: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.33: 4 residues within 4Å: Chain C: R.49, H.50, S.51, Q.71 Ligand excluded by PLIP EDO.34: 6 residues within 4Å: Chain C: E.77, W.80, T.81, F.130, R.133, L.134 Ligand excluded by PLIP EDO.35: 4 residues within 4Å: Chain C: G.102, I.103, Y.166, K.170 Ligand excluded by PLIP EDO.36: 8 residues within 4Å: Chain C: G.24, T.47, G.48, R.49, H.72, D.73, S.74, A.101 Ligand excluded by PLIP EDO.37: 3 residues within 4Å: Chain C: P.210, G.211, E.214 Ligand excluded by PLIP EDO.38: 2 residues within 4Å: Chain C: E.214, Q.218 Ligand excluded by PLIP EDO.39: 2 residues within 4Å: Chain C: E.213, E.214 Ligand excluded by PLIP EDO.40: 3 residues within 4Å: Chain C: E.213, H.226, I.227 Ligand excluded by PLIP EDO.41: 4 residues within 4Å: Chain C: K.59, G.62, T.63, P.64 Ligand excluded by PLIP EDO.42: 3 residues within 4Å: Chain C: F.69, F.70, Q.71 Ligand excluded by PLIP EDO.43: 5 residues within 4Å: Chain B: Q.262 Chain C: T.220, K.221, Y.259 Ligands: EDO.28 Ligand excluded by PLIP EDO.44: 7 residues within 4Å: Chain A: M.224 Chain C: C.184, A.185, D.188, Y.189, D.190, V.191 Ligand excluded by PLIP EDO.46: 8 residues within 4Å: Chain D: N.99, N.100, A.101, N.124, V.128, M.151, K.170, V.173 Ligand excluded by PLIP EDO.47: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.48: 4 residues within 4Å: Chain D: R.49, H.50, S.51, Q.71 Ligand excluded by PLIP EDO.49: 6 residues within 4Å: Chain D: E.77, W.80, T.81, F.130, R.133, L.134 Ligand excluded by PLIP EDO.50: 4 residues within 4Å: Chain D: G.102, I.103, Y.166, K.170 Ligand excluded by PLIP EDO.51: 8 residues within 4Å: Chain D: G.24, T.47, G.48, R.49, H.72, D.73, S.74, A.101 Ligand excluded by PLIP EDO.52: 3 residues within 4Å: Chain D: P.210, G.211, E.214 Ligand excluded by PLIP EDO.53: 2 residues within 4Å: Chain D: E.214, Q.218 Ligand excluded by PLIP EDO.54: 2 residues within 4Å: Chain D: E.213, E.214 Ligand excluded by PLIP EDO.55: 3 residues within 4Å: Chain D: E.213, H.226, I.227 Ligand excluded by PLIP EDO.56: 4 residues within 4Å: Chain D: K.59, G.62, T.63, P.64 Ligand excluded by PLIP EDO.57: 3 residues within 4Å: Chain D: F.69, F.70, Q.71 Ligand excluded by PLIP EDO.58: 5 residues within 4Å: Chain A: Q.262 Chain D: T.220, K.221, Y.259 Ligands: EDO.13 Ligand excluded by PLIP EDO.59: 7 residues within 4Å: Chain B: M.224 Chain D: C.184, A.185, D.188, Y.189, D.190, V.191 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.15: 3 residues within 4Å: Chain A: Q.262 Chain D: Q.262 Ligands: MG.60 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: A:Q.262, D:Q.262, H2O.4, H2O.8, H2O.41, H2O.45 MG.30: 3 residues within 4Å: Chain B: Q.262 Chain C: Q.262 Ligands: MG.45 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: B:Q.262, C:Q.262, H2O.17, H2O.21, H2O.29, H2O.33 MG.45: 3 residues within 4Å: Chain B: Q.262 Chain C: Q.262 Ligands: MG.30 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: B:Q.262, C:Q.262, H2O.17, H2O.21, H2O.29, H2O.33 MG.60: 3 residues within 4Å: Chain A: Q.262 Chain D: Q.262 Ligands: MG.15 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: A:Q.262, D:Q.262, H2O.4, H2O.8, H2O.41, H2O.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grob, P. et al., Crystal Contact Engineering Enables Efficient Capture and Purification of an Oxidoreductase by Technical Crystallization. Biotechnol J (2020)

Release Date

2020-02-19

Peptides

R-specific alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

R-specific alcohol dehydrogenase