SMTL ID : 6y1g.1

Photoconverted HcRed in its optoacoustic state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: T.104, Y.183 Chain D: I.110 Ligands: EDO.18 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: W.149, K.172, R.206, Q.208 Chain B: E.233 Ligand excluded by PLIP EDO.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: E.95, K.190, A.191 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: P.158, N.160 Chain B: D.175, R.176 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain B: H.114, D.116, K.127, K.129 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain B: T.57, E.58, G.59, A.60 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: D.175, R.176 Chain B: P.158, E.159, N.160 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain B: E.27, G.28, T.29, Y.34, V.130, L.131 Chain C: K.129 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain B: F.46, V.79, H.80, H.81 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain C: D.107, P.140, R.176, R.177, L.178 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain C: D.42, G.43, N.44, T.49, Q.50, S.51 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain B: T.104 Chain C: Y.183 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain C: F.46, V.79, H.80, H.81, K.90 Ligand excluded by PLIP EDO.15: 8 residues within 4Å: Chain A: K.129 Chain D: E.27, G.28, T.29, Y.34, K.129, V.130, L.131 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain C: D.175 Chain D: P.158, E.159, N.160 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain D: H.81, I.85, P.86, D.87 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain A: G.108, I.110 Ligands: EDO.1 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain B: E.106 Chain D: D.107 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuenzalida Werner, J.P. et al., Challenging a Preconception: Optoacoustic Spectrum Differs from the Optical Absorption Spectrum of Proteins and Dyes for Molecular Imaging. Anal.Chem. (2020)

Release Date

2020-07-29

Peptides

GFP-like non-fluorescent chromoprotein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GFP-like non-fluorescent chromoprotein