SMTL ID : 6y1v.1

Mycobacterium tuberculosis FtsZ-GTP-gamma-S in complex with 4-hydroxycoumarin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

12 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 9 residues within 4Å: Chain A: G.202, L.203, G.263, G.264, L.267, I.272, T.293, V.294, I.295 No protein-ligand interaction detected (PLIP) DMS.2: 8 residues within 4Å: Chain A: K.12, E.36, V.54, E.88, L.89 Chain B: N.22, R.26 Ligands: DMS.11 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:E.36 Hydrogen bonds: B:N.22, B:R.26 DMS.3: 6 residues within 4Å: Chain A: R.119, E.153, C.155, D.156, G.217, G.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.119, A:R.119 DMS.4: 8 residues within 4Å: Chain A: I.214, M.215, A.218, G.256, V.257, L.258, I.308, A.310 No protein-ligand interaction detected (PLIP) DMS.5: 7 residues within 4Å: Chain A: D.53, V.54, K.55 Chain B: N.25, M.49, S.50, D.51 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:M.49 Salt bridges: B:D.51 Hydrogen bonds: A:K.55 DMS.7: 8 residues within 4Å: Chain B: G.202, L.203, G.263, G.264, L.267, T.293, V.294, I.295 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.203 DMS.8: 4 residues within 4Å: Chain B: I.198, P.201, N.205, V.206 1 PLIP interactions: 1 interactions with chain B Water bridges: B:V.206 DMS.9: 1 residues within 4Å: Chain B: N.205 No protein-ligand interaction detected (PLIP) DMS.10: 4 residues within 4Å: Chain B: A.93, D.94, G.122, K.212 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:D.94 DMS.11: 6 residues within 4Å: Chain A: E.36 Chain B: N.22, N.25, R.26, E.29 Ligands: DMS.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:N.25 Salt bridges: B:E.29, A:E.36 DMS.12: 4 residues within 4Å: Chain B: T.220, S.250, A.309, G.311 No protein-ligand interaction detected (PLIP) DMS.13: 4 residues within 4Å: Chain B: K.33, T.199, T.200, P.201 No protein-ligand interaction detected (PLIP)

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.6: 23 residues within 4Å: Chain A: G.17, G.18, G.19, N.22, N.41, T.42, G.67, A.68, G.69, A.70, G.101, E.102, G.104, G.105, T.106, G.107, P.132, E.136, R.140, F.180, A.183, D.184, L.187 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.18, A:G.19, A:N.22, A:T.42, A:A.68, A:A.70, A:G.105, A:T.106, A:T.106, A:T.106, A:G.107, A:E.136, A:R.140, A:R.140, A:N.163, A:F.180 Water bridges: A:N.41, A:N.41, A:G.104, A:T.108, A:T.130 Salt bridges: A:D.184 pi-Stacking: A:F.180

1 x 4HC: 4-HYDROXY-2H-CHROMEN-2-ONE(Non-covalent)

4HC.14: 9 residues within 4Å: Chain B: A.39, N.41, L.47, L.48, M.49, S.50, K.55, L.56, D.57 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.39, B:N.41, B:L.47, B:K.55, B:K.55, B:D.57 Hydrogen bonds: B:S.50 Salt bridges: B:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alnami, A. et al., Conformational Flexibility of A Highly Conserved Helix Controls Cryptic Pocket Formation in FtsZ. J.Mol.Biol. (2021)

Release Date

2021-06-09

Peptides

Cell division protein FtsZ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division protein FtsZ

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