SMTL ID : 6y2c.2 (1 other biounit)

Crystal structure of the third KH domain of FUBP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: F.27, Q.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.89 EDO.2: 8 residues within 4Å: Chain A: R.26, P.55, D.56, D.57, G.58, T.59, T.60, E.62 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.26, A:D.56, A:D.57, A:T.59, A:T.59, A:T.60, A:T.60 Water bridges: A:P.55, A:I.64 EDO.3: 5 residues within 4Å: Chain A: R.26, F.27, A.28, V.29, G.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.29, A:G.30 EDO.4: 1 residues within 4Å: Chain A: D.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.83 EDO.5: 4 residues within 4Å: Chain A: P.25, R.26, F.27, P.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.26, A:F.27, A:P.61 EDO.6: 4 residues within 4Å: Chain A: A.47, D.72, R.73, H.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.47, A:D.72, A:R.73

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: S.1, D.46, H.76, I.80 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.1, A:D.46, A:H.76, H2O.1 ZN.8: 1 residues within 4Å: Chain A: D.83 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.83, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., Comparative structural analyses and nucleotide-binding characterization of the four KH domains of FUBP1. Sci Rep (2020)

Release Date

2020-03-25

Peptides

Far upstream element-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Far upstream element-binding protein 1

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